Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTCAGCCATTAGAAGCTATCAAATAAAGTAGGTGTAAA
(((((.(((((((((.((((.&)))))))))....................)))).))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_014702
GeneSymbolKIAA0408
Binding site5438,5478
Score0.846
Seed0
Au0.647
Energy-18.0
Binding len40
Me-6.072
Phylopstem3.396450482758621
Phylopflank2.3881002287500004
Longest consecutive pairings9
Position of longest consecutive pairings31
Pairings in 3prime end6
Position3UTR
2D Structure