Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCAGGCTGGCGCAGCTGCAGA
(((((((((((.(.((..(((&)))..)).).))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_014714
GeneSymbolIFT140
Binding site4304,4326
Score0.923
Seed1
Au0.353
Energy-25.4
Binding len22
Me-8.141
Phylopstem2.066541363636364
Phylopflank3.547472692499999
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure