Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCGGGCGCGCAGGAGTGAAAAGGAGGCGGCGGCCGCAGCTGCGAG
((((((((((((((((.....&.)))))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_014751
GeneSymbolMTSS1
Binding site15,61
Score0.923
Seed1
Au0.294
Energy-30.7
Binding len18
Me-3.938
Phylopstem4.028323749999999
Phylopflank2.5439223166666665
Longest consecutive pairings16
Position of longest consecutive pairings1
Pairings in 3prime end3
Position5UTR
2D Structure