Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACAGTGGCAACTGCAGCA
.....(((((((((((.....&.))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001353894
GeneSymbolSH3KBP1
Binding site580,598
Score1.0
Seed0
Au0.456
Energy-20.2
Binding len13
Me-13.666
Phylopstem1.0828335454545455
Phylopflank0.533021094375
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end3
PositionCDS
2D Structure