Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTTCATATACGTAGTCTGTAT
.((((((((((..((((((((&))))).)))..))))).))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_015000
GeneSymbolSTK38L
Binding site2162,2185
Score0.923
Seed1
Au0.676
Energy-20.4
Binding len23
Me-8.429
Phylopstem0.6209085454545454
Phylopflank1.11257614875
Longest consecutive pairings5
Position of longest consecutive pairings18
Pairings in 3prime end8
Position3UTR
2D Structure