Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTTTAACCACATGAACTAACCTGCGTCAGCAGTTGCAGA
((((((((((...(((.((((&.)))))))...)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_015060
GeneSymbolAVL9
Binding site5758,5799
Score1.0
Seed1
Au0.529
Energy-22.5
Binding len22
Me-11.398
Phylopstem-0.29714009999999996
Phylopflank-0.06615215625
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure