Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CTTACATTCCGTTGTTGCTGCAT
.((((((.((((.((((((..&))))))..))))....)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_015132
GeneSymbolSNX13
Binding site5994,6017
Score0.846
Seed1
Au0.676
Energy-20.7
Binding len23
Me-7.396
Phylopstem4.624912666666667
Phylopflank5.041153124999999
Longest consecutive pairings6
Position of longest consecutive pairings17
Pairings in 3prime end6
Position3UTR
2D Structure