Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTGCTCCTTCAGGTCTGCTGCTGCAT
.((((((.((((..((((((.&))))))..........)))).)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001353957
GeneSymbolSCN1A
Binding site9016,9044
Score0.923
Seed1
Au0.515
Energy-21.7
Binding len28
Me-8.253
Phylopstem4.088579500000001
Phylopflank4.197588968875002
Longest consecutive pairings6
Position of longest consecutive pairings22
Pairings in 3prime end6
Position3UTR
2D Structure