Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCAATCAATTTGCAGCTGCC
..(((((((((((((...((.&))...))))).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_015291
GeneSymbolDNAJC16
Binding site5549,5569
Score0.923
Seed1
Au0.75
Energy-20.3
Binding len20
Me-5.19
Phylopstem0.18355074999999996
Phylopflank0.01282971624999997
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure