Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&AGTCTATGTTGTAGATTGCAGTAGTTCTGGAACCAGTATTTTAACAGGA
.((((((((((((((((((((.&)))))))))))))...))).........................)))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_015295
GeneSymbolSMCHD1
Binding site3286,3335
Score0.846
Seed1
Au0.676
Energy-16.3
Binding len49
Me-3.793
Phylopstem3.3716359125000004
Phylopflank3.6272658200000003
Longest consecutive pairings13
Position of longest consecutive pairings36
Pairings in 3prime end7
PositionCDS
2D Structure