Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGGGGGAAGAGCCAGGCCCTGAGGAACAGCCGCAGCGTGTC
..((((((((((((((.....&.))))))))))).))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_015545
GeneSymbolPTCD1
Binding site2316,2360
Score0.846
Seed1
Au0.368
Energy-23.4
Binding len17
Me-4.957
Phylopstem-0.4871556866666667
Phylopflank-0.008446438750000076
Longest consecutive pairings11
Position of longest consecutive pairings5
Pairings in 3prime end3
Position3UTR
2D Structure