Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTTGGCATGGGCAACCAATAGCATCGTGGCTGCAGG
(((((((((((((((((((((&)))))).))...............))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_015662
GeneSymbolIFT172
Binding site693,731
Score0.846
Seed1
Au0.485
Energy-23.2
Binding len38
Me-3.938
Phylopstem4.508524351351353
Phylopflank3.912332308500001
Longest consecutive pairings13
Position of longest consecutive pairings1
Pairings in 3prime end8
PositionCDS
2D Structure