Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TCTTGCTCTGCAGCATGGACCAAAGAGAAATTCTGCAGA
((((((((((((..((((((.&)))))).)))))))...................))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_015967
GeneSymbolPTPN22
Binding site75,114
Score0.923
Seed1
Au0.529
Energy-19.5
Binding len39
Me-6.084
Phylopstem-0.005216119354838707
Phylopflank0.12467873624999999
Longest consecutive pairings7
Position of longest consecutive pairings25
Pairings in 3prime end6
Position5UTR
2D Structure