Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCGACGTGATTCCCTGGGACGGTCCGTTTCCTGCCGTCAGCTGCC
..(((((((((((....(((.&.))))))).))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_016032
GeneSymbolZDHHC9
Binding site119,165
Score0.846
Seed1
Au0.338
Energy-21.2
Binding len17
Me-6.782
Phylopstem1.2877826666666667
Phylopflank1.6645463212499998
Longest consecutive pairings7
Position of longest consecutive pairings9
Pairings in 3prime end3
Position5UTR
2D Structure