Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&AGTCTGCATTCACTGTTTTGAATTTTTTAATATGCACAGGC
.(((((((((.((((((((((.&))))))))))....................))))).)))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_016073
GeneSymbolHDGFL3
Binding site3229,3270
Score0.846
Seed1
Au0.706
Energy-17.9
Binding len41
Me-6.618
Phylopstem-0.09582660000000001
Phylopflank-0.058163371250000005
Longest consecutive pairings10
Position of longest consecutive pairings31
Pairings in 3prime end7
Position3UTR
2D Structure