Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTACGATCTAGAGTATAAGCTGCGC
.(((((((((((((((((((.&))))))))))....))...))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_016075
GeneSymbolVPS36
Binding site4200,4227
Score0.923
Seed1
Au0.559
Energy-21.3
Binding len27
Me-3.793
Phylopstem4.454054788461539
Phylopflank4.670063835
Longest consecutive pairings10
Position of longest consecutive pairings17
Pairings in 3prime end7
Position3UTR
2D Structure