Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCGAGCGGCTGCCGCTGCAC
.((((((.((((((((..((.&))..)))))))).)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_016148
GeneSymbolSHANK1
Binding site4893,4913
Score1.0
Seed1
Au0.309
Energy-25.7
Binding len20
Me-6.107
Phylopstem-0.06720262499999996
Phylopflank0.5911934237500001
Longest consecutive pairings8
Position of longest consecutive pairings8
Pairings in 3prime end5
PositionCDS
2D Structure