Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCCCGGGCCCGCGGCTGCGC
.(((((((((((.(.(..(((&)))..).).))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_016148
GeneSymbolSHANK1
Binding site4268,4289
Score0.923
Seed1
Au0.265
Energy-24.0
Binding len21
Me-5.818
Phylopstem0.20610163636363635
Phylopflank0.8593437625000002
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure