Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGACATACCCTGCAGCTCTCAGCTGGCTGCAGT
(((((((((((((((((.(((&.))).)))))))....)).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_016340
GeneSymbolRAPGEF6
Binding site6068,6104
Score0.846
Seed1
Au0.471
Energy-23.5
Binding len28
Me-3.938
Phylopstem4.258565090909091
Phylopflank4.62691870875
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure