Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&CTGCGTGGTGCGTGGAGCACTGTAAGTCAGATGAGGGAAGTAGCCAGGG
.((((((.(((...........&.))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001330620
GeneSymbolMSANTD1
Binding site725,774
Score0.923
Seed1
Au0.412
Energy-15.0
Binding len11
Me-12.568
Phylopstem-0.22688581666666666
Phylopflank-0.6255166050000001
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end0
Position5UTR
2D Structure