Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ATCTGGACGTATGTTCCCCATCAGCCGCGGGATCCCCAACATGCTGCT
..(((((((((((((...((.&.))...)))))))).............))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_016404
GeneSymbolTRMT112
Binding site338,386
Score0.846
Seed1
Au0.485
Energy-21.0
Binding len33
Me-5.19
Phylopstem-0.7178227384615388
Phylopflank0.2557106025
Longest consecutive pairings8
Position of longest consecutive pairings19
Pairings in 3prime end4
PositionCDS
2D Structure