Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CTTACGCTGCGGGACCCCGGGCACTGTTGCTGCTGCGGG
((((((((((((.((((((..&)))))))))))....................))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_016408
GeneSymbolCDK5RAP1
Binding site51,90
Score0.923
Seed1
Au0.353
Energy-19.1
Binding len39
Me-5.227
Phylopstem0.41994396687499996
Phylopflank0.25517247550000005
Longest consecutive pairings11
Position of longest consecutive pairings28
Pairings in 3prime end6
Position5UTR
2D Structure