Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCTTTCCACAACTGCAGAGTTGTATGGCTTGCAAG
(((((((((((((((((((((&)))))..))))))))))...........)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_016485
GeneSymbolVTA1
Binding site2210,2245
Score0.923
Seed1
Au0.588
Energy-20.1
Binding len35
Me-3.938
Phylopstem-0.047071923529411766
Phylopflank0.04597169249999999
Longest consecutive pairings10
Position of longest consecutive pairings18
Pairings in 3prime end8
Position3UTR
2D Structure