Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCAAGAGGCAGCCTTGGCAAGAAAACTTGCTGCAT
.(((((((((((((((.....&.))))))...))).........)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001354430
GeneSymbolPCDH15
Binding site234,269
Score0.846
Seed1
Au0.603
Energy-17.9
Binding len29
Me-3.793
Phylopstem0.1258625222222223
Phylopflank0.1687561143750001
Longest consecutive pairings6
Position of longest consecutive pairings22
Pairings in 3prime end3
Position5UTR
2D Structure