Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGCCGCCTGCACCTCCGTTAGGGCGACAGGGCAGCTGG
...(((((((.(((((.....&.)))))...))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017416
GeneSymbolIL1RAPL2
Binding site263,304
Score0.846
Seed0
Au0.338
Energy-18.2
Binding len17
Me-9.339
Phylopstem-0.03097057142857142
Phylopflank0.20763189749999997
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end3
Position5UTR
2D Structure