Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CAGCTGCAGCACAGTGCC
..(((((((((((((......&))))))))))....))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017425
GeneSymbolSPA17
Binding site3461,3479
Score0.846
Seed1
Au0.382
Energy-18.4
Binding len18
Me-5.19
Phylopstem-0.6443466764705882
Phylopflank0.14966272125
Longest consecutive pairings10
Position of longest consecutive pairings8
Pairings in 3prime end2
Position3UTR
2D Structure