Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCACGGCGTGTGCAGCTGCAT
.(((((((((((((((..((.&)))))))...)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017508
GeneSymbolSOX6
Binding site3089,3110
Score0.846
Seed1
Au0.529
Energy-21.8
Binding len21
Me-3.793
Phylopstem1.371448972222222
Phylopflank1.8162488525000002
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end5
Position3UTR
2D Structure