Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGGTGCTGCTGCTGCTGGTGCTGTCATTGCGCCGGCGGCTGCGGG
((((((((((((.(((((...&.)))))))).))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017789
GeneSymbolSEMA4C
Binding site2268,2316
Score0.885
Seed1
Au0.353
Energy-22.7
Binding len20
Me-5.227
Phylopstem2.2002675615384613
Phylopflank3.6339200125
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure