Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGGCAGCCCAGCTGGAGG
((.((((((.((((((.((((&)))).)))))))))))).)).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017857
GeneSymbolSSH3
Binding site430,451
Score0.923
Seed0
Au0.25
Energy-26.0
Binding len21
Me-6.738
Phylopstem5.742441666666667
Phylopflank2.4722735965
Longest consecutive pairings12
Position of longest consecutive pairings4
Pairings in 3prime end7
PositionCDS
2D Structure