Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCTGCAGCCCTTCCCACAGCTTGCAAG
(((((((((.(((((((((((&)))).))))))).......))))).)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017857
GeneSymbolSSH3
Binding site1811,1841
Score0.846
Seed1
Au0.382
Energy-21.8
Binding len30
Me-5.18
Phylopstem-0.20301604499999995
Phylopflank0.03822383374999995
Longest consecutive pairings7
Position of longest consecutive pairings18
Pairings in 3prime end8
PositionCDS
2D Structure