Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTCATGGTACAGCTGCTGAGGCCGCAGG
((((.((((((((((((((((&)))).....)))))))))...))).)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017857
GeneSymbolSSH3
Binding site391,421
Score0.846
Seed0
Au0.353
Energy-21.3
Binding len30
Me-8.057
Phylopstem2.6509632333333335
Phylopflank1.7187852894999998
Longest consecutive pairings9
Position of longest consecutive pairings12
Pairings in 3prime end8
PositionCDS
2D Structure