Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTAGAGCTGAAGCACTGCT
..((((((.(((((.(((((.&))))).))))).)))..))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017922
GeneSymbolPRPF39
Binding site3423,3444
Score0.846
Seed1
Au0.662
Energy-19.1
Binding len21
Me-6.749
Phylopstem0.1008895
Phylopflank2.7736771112499996
Longest consecutive pairings5
Position of longest consecutive pairings16
Pairings in 3prime end6
Position3UTR
2D Structure