Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCAGACAACTGCAGAATGTAGA
(((((.((((((((((..(((&)))..))))))))))..))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017940
GeneSymbolNBPF1
Binding site5385,5408
Score1.0
Seed0
Au0.544
Energy-23.0
Binding len23
Me-5.839
Phylopstem0.23392120000000002
Phylopflank-0.16189133000000006
Longest consecutive pairings10
Position of longest consecutive pairings8
Pairings in 3prime end6
Position3UTR
2D Structure