Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTACATTTCCTGGGTCATGGGGCCAGCCCTAGCTGCT
..(((((((.((((((((((.&)))))))....................))).))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017944
GeneSymbolUSP47
Binding site9627,9666
Score0.923
Seed1
Au0.426
Energy-21.6
Binding len39
Me-6.2
Phylopstem-0.018036073333333326
Phylopflank-0.032201051250000015
Longest consecutive pairings7
Position of longest consecutive pairings32
Pairings in 3prime end7
Position3UTR
2D Structure