Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGCGCAGCCGCCAACGAGGAGCGCAAA
((((.(((((((((((.((((&))))..))))))))........))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_017950
GeneSymbolCCDC40
Binding site1146,1176
Score0.923
Seed0
Au0.412
Energy-22.8
Binding len30
Me-8.057
Phylopstem0.6184724736842105
Phylopflank1.6600321822499993
Longest consecutive pairings8
Position of longest consecutive pairings16
Pairings in 3prime end7
PositionCDS
2D Structure