Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTTGCAGCCATGACCAGTTCTGGCCAGGAGCTGGAGG
((.(((((.((((((((((((&))))))))))).................).))))).)).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001354742
GeneSymbolPFKM
Binding site2533,2572
Score0.897
Seed0
Au0.397
Energy-23.8
Binding len39
Me-6.552
Phylopstem0.03486484137931031
Phylopflank0.5867167249999998
Longest consecutive pairings11
Position of longest consecutive pairings28
Pairings in 3prime end8
Position3UTR
2D Structure