Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCTGTAAACCGCAGCA
.....(((((((((....(((&)))...))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_018130
GeneSymbolSHQ1
Binding site1782,1798
Score0.846
Seed0
Au0.485
Energy-19.2
Binding len16
Me-14.634
Phylopstem1.9259959111111111
Phylopflank4.11816292625
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end4
PositionCDS
2D Structure