Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTGGATCCCGAGGACTGCAGCTGCT
..((((((((((((.(..((.&.))..).)))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_018218
GeneSymbolUSP40
Binding site4551,4578
Score1.0
Seed1
Au0.382
Energy-26.4
Binding len20
Me-5.692
Phylopstem0.9432204999999999
Phylopflank1.4205500905000001
Longest consecutive pairings12
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure