Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTTTATTCCCGGCCCCACCCGCCAAAATGAACAGCTCGGACGAAGAGAAGCAGCTGCAGC
((((((((((((((((.....&.)))))).............)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_018330
GeneSymbolSHTN1
Binding site80,142
Score0.923
Seed1
Au0.515
Energy-21.5
Binding len31
Me-3.938
Phylopstem0.011232237931034462
Phylopflank0.4299717700000001
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end3
Position5UTR
2D Structure