Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCCTTGGGCGCTGGAGTACGCTTGGGACTGGGGCTGCGAG
((((((((.(((((.((((((&.)).)))).))))).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001193314
GeneSymbolVIPAS39
Binding site244,285
Score0.923
Seed1
Au0.353
Energy-26.5
Binding len24
Me-5.729
Phylopstem0.14621266250000003
Phylopflank0.11919476287499996
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end7
Position5UTR
2D Structure