Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TCTTAAAATCAGCAGCTGTT
..((((((((((((.(((((.&))))).)))).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001195602
GeneSymbolSEPHS1
Binding site2179,2199
Score0.872
Seed1
Au0.647
Energy-20.0
Binding len20
Me-5.692
Phylopstem4.913978607692308
Phylopflank5.95605950375
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end6
Position3UTR
2D Structure