Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCGAGCCGCAGCA
.....(((((((((...((((&))))..))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001195677
GeneSymbolVAPB
Binding site256,272
Score0.846
Seed0
Au0.353
Energy-21.3
Binding len16
Me-14.634
Phylopstem2.945517777777778
Phylopflank3.75443479
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure