Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTTTTCTCTTCTGCCTTGCGAAATAACAGCAGCCTAGCTGTT
..(((((((.(((((((((((&.)))))...........))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001197323
GeneSymbolHIRIP3
Binding site129,173
Score0.923
Seed1
Au0.456
Energy-20.9
Binding len31
Me-6.2
Phylopstem0.03256819090909089
Phylopflank-0.15552763375
Longest consecutive pairings13
Position of longest consecutive pairings1
Pairings in 3prime end8
Position5UTR
2D Structure