Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCTGAGAGGAGCAGCGTGCAGCTGTTGGCCAGCTGCAT
.((((((((((((((((((((&))))...............)))))))).....)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001198621
GeneSymbolXIRP1
Binding site2987,3028
Score0.923
Seed1
Au0.426
Energy-22.7
Binding len41
Me-3.793
Phylopstem2.4633820385
Phylopflank1.413585378375
Longest consecutive pairings8
Position of longest consecutive pairings14
Pairings in 3prime end8
PositionCDS
2D Structure