Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CTTGCTAGAGGTCTTTAGGGAACCTCCGTGAGAGCTGCAGC
((((((((((((.....((((&.))))))))...)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001198806
GeneSymbolMSANTD3
Binding site1378,1419
Score0.846
Seed1
Au0.515
Energy-18.6
Binding len21
Me-7.052
Phylopstem0.7392387333333333
Phylopflank0.18139213625000014
Longest consecutive pairings8
Position of longest consecutive pairings12
Pairings in 3prime end4
Position3UTR
2D Structure