Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGGGGGAAGAGCCAGGCCCTGAGGAACAGCCGCAGCGTGTC
..((((((((((((((.....&.))))))))))).))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001198879
GeneSymbolATP5MF-PTCD1
Binding site2356,2400
Score0.923
Seed1
Au0.368
Energy-23.4
Binding len17
Me-4.957
Phylopstem-0.025917920000000018
Phylopflank-0.40678810625000006
Longest consecutive pairings11
Position of longest consecutive pairings5
Pairings in 3prime end3
Position3UTR
2D Structure