Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCTCGAGCAGTTGTCCCCATAACTCGGAATCTAGAGCCGCTGTTGCGAG
(((((((.((((((.(.((((&.))))).)))))).))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001199398
GeneSymbolNEK1
Binding site54,106
Score1.0
Seed1
Au0.441
Energy-22.3
Binding len22
Me-6.987
Phylopstem0.16606840000000003
Phylopflank-0.21865426162499998
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end6
Position5UTR
2D Structure