Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTACAACTGCTCTAGATTAGTAGATGCATCTAAGCAGGCAGCAGG
((((.(((((((((((((((.&))))))))))))..........................))).)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001199739
GeneSymbolCTSS
Binding site2286,2333
Score0.846
Seed0
Au0.647
Energy-23.0
Binding len47
Me-8.057
Phylopstem0.09337675365853665
Phylopflank0.30153146374999995
Longest consecutive pairings12
Position of longest consecutive pairings35
Pairings in 3prime end7
Position3UTR
2D Structure