Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TCTTTATGCGGTGGCTGCC
..((((((((.((...((((.&))))...)).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001199747
GeneSymbolHOXD8
Binding site1330,1349
Score0.923
Seed1
Au0.515
Energy-18.3
Binding len19
Me-9.607
Phylopstem-0.14243162499999998
Phylopflank0.9745607350000001
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure