Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TTTTACGACCCAGCA
.....((((.((((((((((.&)))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001199747
GeneSymbolHOXD8
Binding site81,96
Score0.897
Seed0
Au0.471
Energy-18.3
Binding len15
Me-14.908
Phylopstem4.265041999999999
Phylopflank3.309193487499999
Longest consecutive pairings14
Position of longest consecutive pairings1
Pairings in 3prime end7
Position5UTR
2D Structure